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How might continuous and discontinuous modes of DNA replication be distinguished experimentally?

Question

How might continuous and discontinuous modes of DNA replication be distinguished experimentally?

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Solution

Distinguishing between continuous and discontinuous modes of DNA replication can be done experimentally through a few different methods. Here's a step-by-step guide on how one might do this:

  1. Labeling: The first step is to label the newly synthesized DNA so it can be distinguished from the original DNA. This can be done by incorporating a radioactive or fluorescent nucleotide precursor into the DNA during replication.

  2. DNA Replication: Allow the cells to undergo DNA replication. In continuous replication, one new strand (the leading strand) is synthesized continuously in the 5' to 3' direction. In discontinuous replication, the other new strand (the lagging strand) is synthesized in short fragments (Okazaki fragments) in the 5' to 3' direction, but overall in the 3' to 5' direction relative to the template.

  3. DNA Extraction: After replication, the DNA is extracted from the cells.

  4. Fragmentation: Treat the DNA with an enzyme that breaks it down into individual nucleotides or small fragments. This step is crucial for distinguishing between continuous and discontinuous replication. If replication is continuous, the newly synthesized DNA will be in long strands. If replication is discontinuous, the newly synthesized DNA will be in short fragments (Okazaki fragments).

  5. Gel Electrophoresis: The fragmented DNA is then separated by size using gel electrophoresis. The DNA fragments are loaded onto a gel, and an electric current is applied. Smaller fragments move faster and further through the gel than larger fragments.

  6. Visualization: The gel is then visualized under UV light (if the nucleotides were fluorescently labeled) or by autoradiography (if the nucleotides were radioactively labeled).

  7. Analysis: If replication was continuous, you would expect to see long strands of newly synthesized DNA. If replication was discontinuous, you would expect to see short fragments of newly synthesized DNA (Okazaki fragments).

This experiment would allow you to distinguish between continuous and discontinuous modes of DNA replication based on the size of the newly synthesized DNA strands.

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