Calculate the first two principal components of the wine data and cluster it into g = 3 clusters by fitting a three-component bivariate normal mixture model.
Question
Calculate the first two principal components of the wine data and cluster it into g = 3 clusters by fitting a three-component bivariate normal mixture model.
Solution
To perform this task, you would typically use a programming language like Python or R that has libraries for data analysis and machine learning. Here's a step-by-step guide on how to do this in Python using pandas for data manipulation, sklearn for Principal Component Analysis (PCA) and Gaussian Mixture Models (GMM), and matplotlib for visualization.
- Import the necessary libraries:
import pandas as pd
from sklearn.decomposition import PCA
from sklearn.mixture import GaussianMixture
import matplotlib.pyplot as plt
- Load the wine dataset. The wine dataset is a classic dataset available in sklearn datasets.
from sklearn.datasets import load_wine
wine = load_wine()
df = pd.DataFrame(wine.data, columns=wine.feature_names)
- Perform PCA to reduce the dimensionality of the dataset to 2:
pca = PCA(n_components=2)
principalComponents = pca.fit_transform(df)
principalDf = pd.DataFrame(data = principalComponents, columns = ['principal component 1', 'principal component 2'])
- Fit a Gaussian Mixture Model with 3 components:
gmm = GaussianMixture(n_components=3)
gmm.fit(principalDf)
- Predict the clusters:
labels = gmm.predict(principalDf)
- Plot the clusters:
plt.scatter(principalDf['principal component 1'], principalDf['principal component 2'], c=labels, cmap='viridis')
plt.show()
This will give you a scatter plot of the first two principal components of the wine data, colored by the cluster assignments from the Gaussian Mixture Model.
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